Document Type : Original Research

Authors

1 PhD, Department of Physics, Faculty of Sciences and Mathematics, Diponegoro University, Jl. Prof. Soedarto SH, Tembalang, Semarang 50275, Central Java, Indonesia

2 MSc, Department of Physics, Faculty of Sciences and Mathematics, Diponegoro University, Jl. Prof. Soedarto SH, Tembalang, Semarang 50275, Central Java, Indonesia

3 PhD, Department of Health Sciences, Faculty of Medical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan

4 PhD, Department of Applied Physics and Medical Imaging, California State University Channel Islands, Camarillo, CA 93012, USA

Abstract

Background: Noise reduction is a method for reducing CT dose; however, it can reduce image quality.
Objective: This study aims to propose a selective mean filter (SMF) and evaluate its effectiveness for noise suppression in CT images.
Material and Methods: This experimental study proposed and implemented the new noise reduction algorithm. The proposed algorithm is based on a mean filter (MF), but the calculation of the mean pixel value using the neighboring pixels in a kernel selectively applied a threshold value based on the noise of the image. The SMF method was evaluated using images of phantoms. The dose reduction was estimated by comparing the image noise acquired with a lower dose after implementing the SMF method and the noise in the original image acquired with a higher dose. For comparison, the images were also filtered with an adaptive mean filter (AMF) and a bilateral filter (BF).
Results: The spatial resolution of the image filtered with the SMF was similar to the original images and the images filtered with the BF. While using the AMF, spatial resolution was significantly corrupted. The noise reduction achieved using the SMF was up to 75%, while it was up to 50% using the BF.
Conclusion: SMF significantly reduces the noise and preserves the spatial resolution of the image. The noise reduction was more pronounced with BF, and less pronounced with AMF.

Keywords

Introduction

Computed tomography (CT) is an important imaging modality commonly used in clinical examinations [ 1 , 2 ]. Many studies have reported that the radiation dose during CT is greater than other imaging modalities [ 3 - 4 ]. This leads to a greater risk of cancer for the patient [ 5 - 7 ]. Efforts to reduce CT dose have been carried out by various methods, such as using iterative reconstruction (IR), tube current modulation (TCM), automatic exposure control (AEC), adjusting kV based on patient size, and so on [ 8 - 12 ]. One such procedure for reducing dose uses a noise reduction technique [ 13 , 14 ]. This procedure is carried out as follows: first, the images are acquired at a low input parameter (e.g. low mA or fast rotation time), resulting in low dose and noisy images, and second the noise is then reduced using a noise reduction filter [ 14 ]. The main problem of the noise reduction technique is a decrease in spatial resolution of the image [ 15 ]. The low-resolution image may potentially lead to misinterpretation when the diagnosis of diseases and abnormalities. For this reason, several efforts have been made to ensure that spatial resolution does not significantly decrease [ 16 - 24 ].

There are several algorithms for noise reduction, e.g. the mean filter (MF) [ 14 ], adaptive mean filter (AMF) [ 16 , 17 ], and bilateral filter (BF) [ 18 - 22 ]. The simplest one is the MF [ 14 ], the AMF is a refinement of the mean filter [ 16 , 17 ] and the BF is considered as a state-of-the-art noise reduction technique [ 22 ]. The BF combines filter range and filter domain in a specific window size. The BF is a non-iterative adaptive smoothing filter reducing noise with maintaining the edges of the objects within an image [ 18 ]. The BF has three variables, including the window size, the filter range, and the filter domain. This allows the BF to maintain a high degree of fine detail and texture of image. However, the BF technique requires relatively heavy computation and is mathematically complex so that development of a simple and fast algorithm for noise reduction with excellent image quality would be very significant [ 23 , 24 ]. In this paper, we aim to propose and evaluate a novel noise reduction technique based on the MF with the aim of reducing the noise in an image without significantly reducing the spatial resolution.

Material and Methods

The proposed algorithm

This experimental study was carried out on the new noise reduction algorithm. Previous algorithms of noise reduction included mean filter (MF), adaptive mean filter (AMF), and bilateral filter (BF). A MF simply replaces each pixel value in an image (I(x,y)) with the mean value of itself and its neighbors (I(x+i,y+j)) using equation (1).

IMF(x,y)=i=n-12,j=m-12+n-12,+m-12I(x+i,y+j)N (1)

Where N=n×m and n and m are odd positive integer numbers. In this study, n = m = 5. The mean filter is simple to implement, but significantly reduces the spatial resolution of the image. An adaptive mean filter (AMF) was introduced to reduce the noise based on the local variance of the image. The original image (I(x,y)) was filtered using equation (2)

IAMF(x,y)=IMF(x,y)+σL2-σg2σL2(I(x,y)-IMF(x,y)) (2)

Where σg is the global variance of the noisy image, and σL is the local variance of the image. In relatively homogeneous areas, σL is small and the filter performs more noise reduction so that the equation tends to the value of IMF (x,y), and in the area of the edges, σL is large and the filter performs little noise reduction so that the equation tends to the value of I(x,y). The result is an image with low noise, but the spatial resolution can still be significantly compromised [ 16 , 17 ].

In order to improve spatial resolution in the resulting image, the BF was introduced. The BF incorporates the pixel value similarity (i.e. filter range) and the geometric range in an n × m sliding window [ 18 - 22 ]. The BF was calculated using the equation (3).

IBF(x,y)=1ki=n-12,j=m-12+n-12,+m-12e-x-i2+y-j2d2e-(I(x,y)-I(x+i,y+j))2r2I(x,y) (3)

Where k is normalization constant and calculated by the equation (4)

k=i=n-12,j=m-12+n-12,+m-12e-x-i2+y-j2d2e-(I(x,y)-I(x+i,y+j))2r2 (4)

Where σd represents the geometric spread. By increasing σd, more neighboring pixels are utilized for denoising, resulting in increased filtering. In this study, σd=2. σr represents the pixel intensity spread. It should be carefully chosen and is usually determined by trial and error [ 22 ]. In this study, σr was taken as the standard deviation of the image (SD).

We propose a new simple technique, which we refer to as a selective mean filter (SMF). Unlike the standard MF method which calculates the average pixel using all pixels in a particular kernel area, the SMF algorithm calculates the average value selectively. Pixel selection is characterized by a threshold value (h). If a neighboring pixel in a kernel is greater or smaller than the threshold value from the value of the central pixel then it is not considered as noise and is not included in the noise reduction process. Pixel selection is accomplished using equation (5)

I(x+i,y+j)={I(x+i,y+j), if |I(x,y)-I(x+i,y+j)|≤h0, if |I(x,y)-I(x+i,y+j)|>h (5)

For every i and j, if |I(x,y)-I(x+i,y+j)|>h, then N'(x,y)=N-1. The noise image reduction is then calculated using equation (6).

ISMF(x,y)=i=n-12,j=m-12+n-12,+m-12I(x+i,y+j)N(x,y) (6)

With equations (5) and (6), in the edge areas, it is likely that the differences of all the neighboring pixel values from the central pixel value exceeds h. In that case, the pixel value ISMF(x,y) is equal to I(x,y). Conversely, in homogeneous regions, it is likely that the differences of all neighboring pixel values from the central pixel value is smaller than h. In that case, the pixel value ISMF (x,y) is equal to IMF (x,y).

The noise reduction process of the SMF method is shown in Figure 1. The mean pixel value at the central pixel in a position of (x, y) was not calculated from all the pixels in a particular square kernel (i.e. union of blue and red areas), but was calculated only from the blue area where the differences of pixel values from the value of the central pixel were lower than the threshold value. The pixels, which were the outside of blue area, and even those still in the kernel of interest with their different pixel values higher than threshold value, were not used in the calculation.

Figure 1. An illustration of selecting neighboring pixels for noise reduction in the selective mean filter (SMF) method.

The threshold (h) was based on the magnitude of the standard deviation (SD) of the pixel values within an image, which is an indication of the amount of noise [ 25 ]. In this study, we used a threshold of 3 SDs to cover most of the image noise. The SD was automatically calculated using a previously proposed algorithm [ 26 ]. This automatically chooses the minimum value in the standard deviation map (SDM).

SD = min (SDM) (7)

The SMF was expected to significantly reduce noise, without corrupting the spatial resolution. Because it was MF-based, the technique is computationally light and fast so that it is easier to implement in clinical images than the BF. We used MatLab (Mathworks) to implement the algorithm.

Evaluation of the proposed algorithm

The evaluation of the proposed noise-reduction algorithm was carried out on images of 3 objects, viz. an in-house wire phantom, the AAPM CT performance phantom (model 610, computerized imaging reference systems, Inc., Virginia, USA), and finally a pelvic anthropomorphic phantom (Kyoto Kagaku Ltd., Kyoto, Japan) (Figure 2). The images were filtered using our proposed method (SMF), and compared with the results of the AMF and the BF filters.

Figure 2. Images for evaluation of the proposed method of noise reduction. (a) In-house point phantom, (b) AAPM CT performance phantom, and (c) pelvis of anthropomorphic phantom.

An in-house wire phantom was constructed from a 200 ml CT injector syringe (Kyorindo Nemoto Ltd., Japan) with a 4.8-cm diameter (Figure 2(a)). A tin wire with a 0.1-mm diameter was positioned at the center of the syringe cylinder. The phantom was filled with water with 150-ml volume [ 27 ]. The in-house wire phantom was scanned by a CT Toshiba Alexion 4 installed at Kyushu University, with 120 kVp tube voltage, 150 mA tube current, 1 s rotation time, 7 cm field of view, 4 mm slice thickness, and a focal spot size of 1.1 mm. The image was reconstructed with FC13 and FC30 reconstruction filters. The in-house wire phantom images were then filtered by the AMF, BF and SMF filters. The image spatial resolution was characterized using a modulation transfer function (MTF) curve. The MTF curves were calculated using an automated algorithm proposed previously [ 27 ]. Numerical values of MTF10 and MTF50 were obtained from all images. In addition, image noise was characterized using a noise power spectrum (NPS) curve, calculated using the ImQuest software [ 28 ]. Region of interests (ROIs) for NPS calculations was at the homogeneous region.

The resolution insert (Part Number 610-03) of the AAPM CT performance phantom is shown in Figure 2(b). The phantom consists of an acrylic equivalent object with eight sets of holes (five holes per set). The diameters of holes were 1.75, 1.5, 1.25, 1.00, 0.75, 0.61, 0.50, and 0.40 mm, respectively. The distance between each hole with same diameter is equal to the hole diameter. Each row is 5 mm apart. The phantom was scanned by a CT Siemens Emotion 6 installed at National Diponegoro Hospital (RSND), with 130 kVp, 23 mA, 600 ms time rotation, 10 mm slice thickness, 27 cm field of view, 0.85 pitch factor, and convolution kernel B41s. The spatial resolution was assessed by visual observation from the minimum hole diameter that could be distinguished. The noise of the images was determined from the SD of the homogeneous acrylic object.

The anthropomorphic phantom was scanned with a CT Toshiba Alexion 4 installed at Kyushu University, with 120 kVp, 1 s time rotation, 7 mm slice thickness, 40 cm field of view, 1.5 pitch factor, and FC13 reconstruction filter. The anthropomorphic phantom was scanned three times with different three tube currents of 25, 50 and 100 mAs, corresponding to CTDIvol of 1.5, 3.0 and 6.0 mGys. The image of the anthropomorphic phantom in the pelvic part is shown in Figure 2(c). The noise value in the filtered images can be used to estimate the dose reduction achieved.

Results

The image of the in-house point phantom

The MTF curves of original and filtered images using AMF, BF and SMF are shown in Figure 3(a-b). It is clear that the MTFs of the filtered images using BF and SMF are very similar to the original unfiltered images. The MTF curves coinciding each other, indicating BF and SMF maintain the spatial resolution of the images. Conversely, images filtered with the AMF have poorer spatial resolution. The MTF50 and MTF10 values are listed in Table 1.

Figure 3. Modulation transfer function (MTF) and noise power spectrum (NPS) curves of original unfiltered images and filtered images using adaptive mean filter (AMF), bilateral filter (BF) and selective mean filter (SMF) for images reconstructed using FC13 and FC30. (a) MTF for FC13, (b) MTF for FC30, (c) noise power spectrum (NPS) for FC13, and (d) NPS for FC30.

Images MTF10 (cycles/mm) MTF50 (cycles/mm)
FC13 FC30 FC13 FC30
Original 0.833 1.119 0.409 0.839
AMF 0.733 1.016 0.380 0.722
BF 0.832 1.120 0.412 0.839
SMF 0.832 1.118 0.416 0.840
Table 1. The modulation transfer function (MTF50 and MTF10) for original and filtered images using adaptive mean filter (AMF), bilateral filter (BF) and selective mean filter (SMF).

The NPS curves of original and filtered images using the AMF, BF and SMF are shown in Figure 3(c-d). For FC13, the NPS curve from SMF coincides with that from AMF, and the noise is significantly lower than the original image. The BF produces slightly more noise than the SMF. The same pattern is seen in the FC30. However, the difference in the NPS between the SMF and the BP is higher. These results reveal that SMF produces lower noise than BF with similar spatial resolution.

The image of AAPM CT phantom

The image of the spatial resolution module in the AAPM CT performance phantom is shown in Figure 4. The spatial resolution of the unfiltered image is very good, marked by a sharp point object and sharp small distinguishable array objects (as see arrows on the image), but the image noise is significant (as seen in the box of the image). Conversely, in the image filtered with the AMF, spatial resolution is poor, characterized by blurring of the point object and indistinguishable small array objects, although the noise is lower. Different results are obtained when the image is filtered with the BF and the SMF. The spatial resolutions are as good as in the original image, accompanied by small levels of noise comparable to that in the image filtered by the AMF Filter. The noises of the original, AMF, BF and SMF images are 10.4, 4.1, 8.6, and 6.2 HUs, respectively. It is clear that the noise using the SMF is smaller than that using the BF with comparable image spatial resolution.

Figure 4. Image of spatial resolution module in the AAPM CT performance phantom. (a) Unfiltered original image, (b) Filtered image with the adaptive mean filter (AMF), (b) Filtered image with the bilateral filter (BF), and (d) Filtered image with the selective mean filter (SMF).

Dose reduction

Figure 5 shows the anthropomorphic phantom image in the pelvic region scanned at a dose of 6.0 mGy, which was then filtered using the AMF, BF and SMF. The phantom was also scanned with half dose (3.0 mGy), and with a quarter the dose (1.5 mGy), and noise reduction was again performed using the AMF, BF, and our proposed SMF. Noise for each image was calculated and the box-plots of noise are shown in Figure 6. The noise in the image was reduced by incremental dose as expected. However, applying the SMF to the images scanned with doses of 1.5 and 3.0 mGy reduced the noise to a level comparable to that obtained with a dose of 6.0 mGy, i.e. the SMF potentially reduces the dose required to obtain a certain noise level up to 75%, without any significant reduction in spatial resolution. By comparison, the BF was only able to reduce the dose up to 50% from the dose of 3.0 mGy to 1.5 mGy for a similar noise level, and a 50% dose reduction was not achieved from the dose of 6.0 mGy to 3.0 mGy.

Figure 5. Image of anthropomorphic phantom in the pelvic region scanned at a dose of 6.0 mGy. (a) Original unfiltered image, (b) Adaptive mean filter (AMF) filtered image, (c) Bilateral filter (BF) filtered image, (d) filtered image with selective mean filter (SMF). There were 10 slices of every set of images for each radiation dose.

Figure 6. The box-plots of noise in the anthropomorphic phantom images obtained with doses of 6.0, 3.0, and 1.5 mGy, and with filtering using the adaptive mean filter (AMF), bilateral filter (BF), and selective mean filter (SMF).

Discussion

Noise reduction is one way to optimize the dose of CT scans, by reducing the radiation dose while maintaining image quality. Other methods include tube current modulation (TCM) [ 29 ], iterative reconstruction (IR) [ 30 ], increased detector efficiency [ 31 ], and the use of an adaptive collimator [ 31 ]. With some of these techniques, it is possible to reduce the dose to less than 1 mSv and still obtain an image quality level that can be used to make a diagnosis.

Noise reduction can be accomplished in both the projection space and the reconstructed image space. In the reconstructed image space, it can be implemented without access to the projection data, whereas it requires the projection data in projection space. The main drawback with the noise reduction method is the degradation of spatial resolution. Several proposals have been made to overcome this such as the adaptive mean filter (AMF) [ 16 ]. However, this study shows that with AMF, the spatial resolution drops significantly in general. Some researchers have combined the AMF approach with edge detection [ 17 ], i.e. the AMF is only carried out at the non-edge area, while in the edge area, filtering is not carried out. Although this approach can be beneficial, the image appears unnatural because boundaries appear in the edge areas [ 17 ].

Noise reduction techniques considered successful in maintaining the spatial resolution of the image, including the bilateral filter (BF) [ 32 ]. In the BF approach, noise reduction is carried out by convolving a Gaussian noise model with the pixels in the image and then incorporating the pixel values of the image. There are two main parameters, including determining the filter range and determining the domain filter. Some researchers reported that the BF was able to reduce doses by half while maintaining an image quality for diagnosis [ 20 - 22 ]. Even though in the BF filter, noise is modeled in a Gaussian distribution using the value of image standard deviation (SD), the SD values are not actually taken from the image. Al-Hinnawi reported that the optimum range of filter was between 0.05 and 0.5 pixels [ 22 ]. The current study points out that the BF is only able to reduce the dose by about 50% from a dose of 3 mGy to 1.5 mGy, and less than 50% for a dose change from 6 mGy to 3 mGy.

The SMF proposed in this study is computationally simpler than the BF since it uses a mean filter (MF)-based approach. The filtering process is carried out only by calculating the mean value of neighboring pixels and itself. However, the neighborhood value involved in the calculation is carried out selectively, i.e. the difference in value does not exceed a certain threshold value. This threshold value is based on the SD value of the image obtained directly from the image automatically. For practical considerations, the threshold value can be achieved by 3 SDs. From this study, it was found that the SMF could reduce the dose to 75% (from a dose 6.0 mGy to 1.5 mGy), i.e. the SMF is a better filter than the BF, with comparable spatial resolution of the image, making it preferable for most applications. The SMF method is about 54% faster than the BF method. Using our netbook (Lenovo Ideapad 330S with intel Core i5), the computing time of the SMF method was 1.64 ± 0.05 s and the BF method was 3.56 ± 0.10 s for one slice of image.

The limitation of SMF (and also the BF) is that if the noise in the image is relatively high, the low-contrast object might be lost. If the noise is high, the pixel threshold in the SMF calculation is also high, and therefore the filtering is robustly executed. As a result, the edges of low-contrast objects, for example an object with contrast under 10 HU, will be corrupted. If these objects are small, they may be lost completely. This limitation is experienced by almost all existing filtering methods. An effectiveness test of the SMF on low-contrast objects has not been done yet. One way to increase the effectiveness of the SMF on low-contrast objects might do using statistical approach. The selection of pixels in the SMF would be determined by not only the threshold value (h) but also a statistical test. However, incorporating a statistical selection of the pixels may lead to increased computation time.

The SD used in the current study is obtained automatically using an algorithm proposed previously by Anam et al, [ 26 ]. The SD is the minimum value of the SD map measured using an ROI of about 1 cm2. This SD value is about half the noise value obtained by Christianson et al., [ 33 ] using the global noise method, obtained as the highest frequency of the SD map. It can also be calculated manually in a homogeneous manner, but it may become less effective for the use in a clinical environment because of relatively long time.

The evaluation in this preliminary study was carried out on the in-house wire phantom, the AAPM CT performance phantom, and an anthropomorphic phantom. A more comprehensive study needs to be conducted by involving many clinical images with direct assessment from radiological experts and/or using more comprehensive physical parameters or comprehensive image texture methods such as correlation, uniformity, entropy, and homogeneity.

Another state-of-the-art filter is a non-local mean (NLM) filter [ 34 - 38 ]. The NLM exploits similarity between nearby image patches to estimate an image structure [ 38 ] and only employs the pixels within image patches that have a similarity to the patch of interest. Hence, it maintains a high degree of image resolution. A direct comparison of the SMF with the NLM filter should be carried out so that the advantages and disadvantages of this SMF filer can be fully understood.

Conclusion

Noise reduction with a selective mean filter method has been proposed and developed in this study. Evaluation of the filter has been carried out on images of phantoms, and the results show that noise can be significantly reduced, while maintaining the spatial resolution of the image. It was found that this method has the potential to reduce patient doses up to 75%. Further evaluation of the patients’ images with a medical expert and comparison to other state-of-the-art noise reduction needs to be done to quantify the decrease in radiation dose and the magnitude of the optimal threshold value for clinical images for various examinations with CT scan.

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